One-to-n alignments

Command: compare-matrices  -v 1 -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2019/07/03/compare-matrices_2019-07-03.154751_qcueJ1/compare-matrices_query_matrices.transfac -file2 $RSAT/public_html/motif_databases/footprintDB/footprintDB.plants.motif.tf -format2 tf -strand DR -lth cor 0.7 -lth Ncor 0.4 -uth match_rank 50 -return cor,Ncor,logoDP,NsEucl,NSW,match_rank,matrix_id,matrix_name,width,strand,offset,consensus,alignments_1ton -o $RSAT/public_html/tmp/www-data/2019/07/03/compare-matrices_2019-07-03.154751_qcueJ1/compare-matrices.tab

One-to-n matrix alignment; reference matrix: oligos_5-8nt_m1_shift10 ; 150 matrices ; sort_field=rank_mean

Matrix nameAligned logoscor Ncor logoDP NsEucl NSW rcor rNcor rlogoDP rNsEucl rNSW rank_mean match_rank Aligned matrices
oligos_5-8nt_m1_shift10 (oligos_5-8nt_m1)                         
; oligos_5-8nt_m1; m=0 (reference); ncol1=11; shift=10; ncol=21; ----------atACACGtaww
; Alignment reference
a	0	0	0	0	0	0	0	0	0	0	47	39	159	1	144	0	0	32	70	43	51
c	0	0	0	0	0	0	0	0	0	0	39	37	1	143	2	162	0	26	26	32	40
g	0	0	0	0	0	0	0	0	0	0	38	40	0	0	12	0	162	19	30	32	26
t	0	0	0	0	0	0	0	0	0	0	38	46	2	18	4	0	0	85	36	55	45
ANAC55_ANAC55_ArabidopsisPBM_shift11 (ANAC55:ANAC55:ArabidopsisPBM) 0.870 0.791 5.365 0.927 0.947 6 2 41 15 16 16.000 3 
; oligos_5-8nt_m1 versus ANAC55_ANAC55_ArabidopsisPBM (ANAC55:ANAC55:ArabidopsisPBM); m=3/149; ncol2=10; w=10; offset=1; strand=D; shift=11; score=     16; -----------wACACGTAAy
; cor=0.870; Ncor=0.791; logoDP=5.365; NsEucl=0.927; NSW=0.947; rcor=6; rNcor=2; rlogoDP=41; rNsEucl=15; rNSW=16; rank_mean=16.000; match_rank=3
a	0	0	0	0	0	0	0	0	0	0	0	36	80	2	97	2	1	1	88	87	9
c	0	0	0	0	0	0	0	0	0	0	0	19	3	77	2	96	2	12	8	1	40
g	0	0	0	0	0	0	0	0	0	0	0	15	4	2	0	1	95	13	0	0	10
t	0	0	0	0	0	0	0	0	0	0	0	30	13	19	1	1	2	74	4	12	41
ABI5_M0261_1.02_CISBP_shift10 (ABI5:M0261_1.02:CISBP) 0.848 0.771 6.449 0.921 0.938 15 4 15 25 33 18.400 4 
; oligos_5-8nt_m1 versus ABI5_M0261_1.02_CISBP (ABI5:M0261_1.02:CISBP); m=4/149; ncol2=10; w=10; offset=0; strand=D; shift=10; score=   18.4; ----------bgmCACGTGk-
; cor=0.848; Ncor=0.771; logoDP=6.449; NsEucl=0.921; NSW=0.938; rcor=15; rNcor=4; rlogoDP=15; rNsEucl=25; rNSW=33; rank_mean=18.400; match_rank=4
a	0	0	0	0	0	0	0	0	0	0	18	9	61	0	100	0	0	0	15	16	0
c	0	0	0	0	0	0	0	0	0	0	26	9	31	92	0	100	0	0	7	16	0
g	0	0	0	0	0	0	0	0	0	0	25	65	0	8	0	0	100	0	71	34	0
t	0	0	0	0	0	0	0	0	0	0	31	17	8	0	0	0	0	100	7	34	0
ABF1_M0257_1.02_CISBP_shift10 (ABF1:M0257_1.02:CISBP) 0.845 0.845 3.652 0.935 0.954 20 1 90 7 8 25.200 6 
; oligos_5-8nt_m1 versus ABF1_M0257_1.02_CISBP (ABF1:M0257_1.02:CISBP); m=6/149; ncol2=11; w=11; offset=0; strand=D; shift=10; score=   25.2; ----------gdACACGTGkb
; cor=0.845; Ncor=0.845; logoDP=3.652; NsEucl=0.935; NSW=0.954; rcor=20; rNcor=1; rlogoDP=90; rNsEucl=7; rNSW=8; rank_mean=25.200; match_rank=6
a	0	0	0	0	0	0	0	0	0	0	21	26	68	16	73	0	18	0	12	16	18
c	0	0	0	0	0	0	0	0	0	0	21	16	18	75	8	91	0	10	4	19	28
g	0	0	0	0	0	0	0	0	0	0	37	33	7	0	10	0	82	0	71	40	28
t	0	0	0	0	0	0	0	0	0	0	21	25	7	9	9	9	0	90	13	25	26
AT4G18890_MA1333.1_JASPAR_rc_shift10 (AT4G18890:MA1333.1:JASPAR_rc) 0.773 0.773 0.077 0.905 0.901 77 3 146 86 96 81.600 
; oligos_5-8nt_m1 versus AT4G18890_MA1333.1_JASPAR_rc (AT4G18890:MA1333.1:JASPAR_rc); m=93/149; ncol2=11; w=11; offset=0; strand=R; shift=10; score=   81.6; ----------ycACACGTGyr
; cor=0.773; Ncor=0.773; logoDP=0.077; NsEucl=0.905; NSW=0.901; rcor=77; rNcor=3; rlogoDP=146; rNsEucl=86; rNSW=96; rank_mean=81.600; match_rank=
a	0	0	0	0	0	0	0	0	0	0	81	52	405	0	589	0	0	0	1	0	225
c	0	0	0	0	0	0	0	0	0	0	179	338	60	590	0	589	0	0	0	383	43
g	0	0	0	0	0	0	0	0	0	0	91	140	74	0	0	0	590	0	589	28	319
t	0	0	0	0	0	0	0	0	0	0	239	60	51	0	1	1	0	590	0	179	3